ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGAGTGCAGCGTTGATGA miRNA* ACCAGCGCTGCATTCAATCA mismatches: 1 bulges: 0 |
pre-miRNA
CTTTCCTGGATTGGAGAACCATCATTGAGTGCAGCGTTGATGAAATCCTACATTTTGTGCTCTTAAACTGTTACCAACCCTTTATCCATGGCATCATTTC
ACCAGCGCTGCATTCAATCATGTTTTTCTAACTCTTCCGG
dot-bracket secondary structure
.....(((((((((((((.(((.((((((((((((((((.((((((..........(((((..((((..(((...)))..)))).....))))).)))))
).)))))))))))))))).))).))))))))....)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTTCCTGGATTGGAGAACCATCATTGAGTGCAGCGTTGATGAAATCCTACATTTTGTGCTCTTAAACTGTTACCAACCCTTTATCCATGGCATCATTTC
ACCAGCGCTGCATTCAATCATGTTTTTCTAACTCTTCCGG
dot-bracket secondary structure
.....(((((((((((((.(((.((((((((((((((((.((((((..........(((((..((((..(((...)))..)))).....))))).)))))
).)))))))))))))))).))).))))))))....)))))
SIMILARITIES| miRBase ptc-MIR397a: 3e-48 PMRD ptc-miR397a: 3e-48 microPC miR397: 3e-51 | UniProt no hits RFAM MIR397: 3e-42 | most similar mature miRNAs |
Identical with: miR397 from microPC (MNEST045366) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
