ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf1017
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTATCTGCATTTGCACCTG miRNA* GGTGCAAGTGCAGGTGAATGC mismatches: 1 bulges: 0 |
pre-miRNA
AATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCTTTTGTTTTGTTCTTGACTCCACAAACAAAATCAACTTCTGTCGA
TACAGTATGTGGTACAATTAGCTATGGAAACTCATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTTCA
dot-bracket secondary structure
......(((((((((.(((..((.(((((((((((((((((((((((((((..((((.((.....((((.....(((((.((...(((.((....)).))
)...)).))))).............))))...)).)))).....))))))))))))))))))))))))))).))))).))))).))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCTTTTGTTTTGTTCTTGACTCCACAAACAAAATCAACTTCTGTCGA
TACAGTATGTGGTACAATTAGCTATGGAAACTCATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTTCA
dot-bracket secondary structure
......(((((((((.(((..((.(((((((((((((((((((((((((((..((((.((.....((((.....(((((.((...(((.((....)).))
)...)).))))).............))))...)).)))).....))))))))))))))))))))))))))).))))).))))).))))......
SIMILARITIES| miRBase ptc-MIR530b: 4e-76 PMRD ptc-miR530b: 4e-76 microPC miR530: 1e-72 | UniProt no hits RFAM MIR530: 7e-75 | most similar mature miRNAs |
Identical with: miR530 from microPC (MNEST045885) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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