ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf100
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACCGAACCGAACCGAAAAT miRNA* TTTCGGTTCGGTTTCGGTTTTA mismatches: 3 bulges: 1 |
pre-miRNA
ATATGCTTGGCCAAGATGAAATCGGTTTTTTTCCGGTTTTTCCTTTCAATTAACCGAACCGAACCGAAAATGCTCGGTTTGAACCGGTTTCGGTTCGGTT
TCGGTTTTAATTTAAAAATAAATAAATAAATCGGTTTGGTTAGTTTTTTGGGTGAA
dot-bracket secondary structure
......((((..(((..((((((((.......))))))))..)))))))..((((((((((((((((((....(((((....)))))))))))))))).)
))))))...((((((((((((.(((((......))))).)))..)))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATATGCTTGGCCAAGATGAAATCGGTTTTTTTCCGGTTTTTCCTTTCAATTAACCGAACCGAACCGAAAATGCTCGGTTTGAACCGGTTTCGGTTCGGTT
TCGGTTTTAATTTAAAAATAAATAAATAAATCGGTTTGGTTAGTTTTTTGGGTGAA
dot-bracket secondary structure
......((((..(((..((((((((.......))))))))..)))))))..((((((((((((((((((....(((((....)))))))))))))))).)
))))))...((((((((((((.(((((......))))).)))..)))))))))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf11909-akr: 0.0000005 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
