ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf1049
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCCAGGATCATGTCATGGTG miRNA* TCATGATAGGGAATTGGGAGT mismatches: 3 bulges: 2 |
pre-miRNA
TACATAATGGTACATGTTCATGCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCGTATGCATGGATCTGGTATACATGCATGCATGCATACATGTCT
GTAGATATCATCACATCATGATAGGGAATTGGGAGTACGCAGATTTTTAGAATGCCCGTTATTG
dot-bracket secondary structure
.......((((((((((....)))))))))).(((((..((.(((((((((((((((....)))).((..((((((...((((.(((((....))))).)
))).)))))))))))))))))))..)).))))).....(((..((....)).))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACATAATGGTACATGTTCATGCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCGTATGCATGGATCTGGTATACATGCATGCATGCATACATGTCT
GTAGATATCATCACATCATGATAGGGAATTGGGAGTACGCAGATTTTTAGAATGCCCGTTATTG
dot-bracket secondary structure
.......((((((((((....)))))))))).(((((..((.(((((((((((((((....)))).((..((((((...((((.(((((....))))).)
))).)))))))))))))))))))..)).))))).....(((..((....)).))).........
SIMILARITIES| miRBase rno-mir-297: 0.000008 PMRD ptc-miRf11143-akr: 1e-41 microPC no hits | UniProt no hits RFAM Clostridiales-1: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
