ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf1252
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGTAACTGATGGAACCTCG miRNA* ATGTTCCATCAGTCGCTGCAC mismatches: 4 bulges: 0 |
pre-miRNA
AAGAATCAAGAAGACGGATCCAGTAACTGATGGAACCTCGACCAGTGAACCTGCTGCAGAGGCTACAGAAAGCGATGTTGCTAAGCCAGCTGAAGATGTT
CCATCAGTCGCTGCACCTGTTGAAACTCCTGC
dot-bracket secondary structure
............(((((...((((.(((((((((((.((...((((......((.(((...(((......)))..))).)).......))))..)).)))
)))))))).))))...)))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAGAATCAAGAAGACGGATCCAGTAACTGATGGAACCTCGACCAGTGAACCTGCTGCAGAGGCTACAGAAAGCGATGTTGCTAAGCCAGCTGAAGATGTT
CCATCAGTCGCTGCACCTGTTGAAACTCCTGC
dot-bracket secondary structure
............(((((...((((.(((((((((((.((...((((......((.(((...(((......)))..))).)).......))))..)).)))
)))))))).))))...)))))...........
SIMILARITIES| miRBase no hits PMRD ptc-miRf12083-akr: 4e-50 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
