ABOUT THIS RECORDspecies: Populus x canadensis
miRNA family: MIR1444
source: miRNEST
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCATATTCGGTCAACGTTCG miRNA* AATATTGATCGAATATGTATG mismatches: 2 bulges: 0 |
pre-miRNA
AGCTTATCGAATATTTCCTTGTTTATCCCTCGAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCATATTCGGTCAACGTTCGAGT
GATAAACAGAAATAATTGGATCTTTA
dot-bracket secondary structure
......((((.((((((..((((((((.(((((((.(((((((((((((.((((((((((.......)))))))))).))))))))))))).))))))).
)))))))))))))).)))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCTTATCGAATATTTCCTTGTTTATCCCTCGAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCATATTCGGTCAACGTTCGAGT
GATAAACAGAAATAATTGGATCTTTA
dot-bracket secondary structure
......((((.((((((..((((((((.(((((((.(((((((((((((.((((((((((.......)))))))))).))))))))))))).))))))).
)))))))))))))).)))).......
SIMILARITIES| miRBase ptc-MIR1444b: 2e-40 PMRD ptc-miR1444b: 2e-40 microPC miR1444: 5e-31 | UniProt no hits RFAM MIR1444: 3e-39 | most similar mature miRNAs |
Identical with: miR1444 from microPC (MNEST046448) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
