miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002233
species: Populus x canadensis
miRNA family: MIRf540
source: miRNEST

Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGCATTTGCACCTGCATCTT

miRNA*
 GGTGCAGGTGCAAGTGCAGGT

mismatches: 0
bulges: 0
View larger
pre-miRNA
 TCATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATAC
AGTATGTGGGACAATTAGATATAGAGTGTTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTT
TTC

dot-bracket secondary structure
....(((((((((.(((..((.(((((((((((((((((((((((((((((.(((((((..(((((((..((((((.((...(((..........)))..
.)).))))))...(((.(((((...))))).))).))))))).))))))).)))..)))))))))))))))))))))))))).))))).))))).)))).
...


SIMILARITIES
miRBase ptc-MIR530b: 6e-75

PMRD ptc-miR530b: 6e-75

microPC miR530: 3e-80		UniProt no hits

RFAM MIR530: 1e-73		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;