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ABOUT THIS RECORD

ID: MNEST002234
species: Populus x canadensis
miRNA family: MIRf203
source: miRNEST

Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGGTGCAGGTGCAAGTGC

miRNA*
 ATTTGCACCTGCATCTTTTGC

mismatches: 2
bulges: 0
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pre-miRNA
 CATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACA
GTATGTGGGACAATTAGATATAGAGTGTTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTT
T

dot-bracket secondary structure
...(((((((((.(((..((.(((((((((((((((((((((((((((((.(((((((..(((((((..((((((.((...(((..........)))...
)).))))))...(((.(((((...))))).))).))))))).))))))).)))..)))))))))))))))))))))))))).))))).))))).))))..
.


SIMILARITIES
miRBase ptc-MIR530b: 6e-75

PMRD ptc-miR530b: 6e-75

microPC miR530: 3e-80		UniProt no hits

RFAM MIR530: 1e-73		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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