ABOUT THIS RECORDspecies: Populus x canadensis
miRNA family: MIR1444
source: miRNEST
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACATTCGGTCAATGTTC miRNA* ATGTTGACCGAATATGGATG mismatches: 1 bulges: 0 |
pre-miRNA
TTTTTTGAGTTTATCACTTGAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGAGCATAA
AT
dot-bracket secondary structure
)..((((.((((((((((.(((((((((((((((.((((.((((.................)))).)))).))))))))))))))).)))))))))).)))
).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTTGAGTTTATCACTTGAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGAGCATAA
AT
dot-bracket secondary structure
)..((((.((((((((((.(((((((((((((((.((((.((((.................)))).)))).))))))))))))))).)))))))))).)))
).
SIMILARITIES| miRBase ptc-MIR1444a: 5.0E-43 PMRD ptc-miRf10525-akr: 2.0E-45 microPC miR1444: 3.0E-32 | UniProt no hits RFAM 4MIR1444: 1.0E-40 | most similar mature miRNAs |
Identical with: miR1444 from microPC (MNEST045069) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
