ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIRf1466
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGTGACGTTGGTGAAGGTG miRNA* GCTCCTTCGCCATCGGAAACTGTGG mismatches: 4 bulges: 1 |
pre-miRNA
GCAGCATCAATGCAGTGACGTTGGTGAAGGTGATCATGGATGGCGCACCCTACCTTCTCAAAGTGGACTTGAAGATGTACAAGAGTAACCCTGAGCTCTC
TGATGCCCTAGCCAAAATGTTCGGCTCCTTCGCCATCGGAAACTGTGGATCCCAAG
dot-bracket secondary structure
...........(((((..((.(((((((((.((.(((((..((.(((...(((.((.((((.......)))).)).)))(((((((........))))).
)).)))))...)))...)).))....))))))))).))...)))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCAGCATCAATGCAGTGACGTTGGTGAAGGTGATCATGGATGGCGCACCCTACCTTCTCAAAGTGGACTTGAAGATGTACAAGAGTAACCCTGAGCTCTC
TGATGCCCTAGCCAAAATGTTCGGCTCCTTCGCCATCGGAAACTGTGGATCCCAAG
dot-bracket secondary structure
...........(((((..((.(((((((((.((.(((((..((.(((...(((.((.((((.......)))).)).)))(((((((........))))).
)).)))))...)))...)).))....))))))))).))...)))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P0C132|IAA30_ORYSJ: 0.000000000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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