ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCGTGGCTCAATCAAA mismatches: 0 bulges: 0 |
pre-miRNA
AAGTTGTAGCATTTTGGTGGAATGATGATGTTGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCG
TGCCAATATCATTATCAGTCTCCAAAAACTCATCAACCAA
dot-bracket secondary structure
).((((.((..((((((.(((....(((((.(((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))
))))))))))).))))).))))))))).))...))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTTGTAGCATTTTGGTGGAATGATGATGTTGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCG
TGCCAATATCATTATCAGTCTCCAAAAACTCATCAACCAA
dot-bracket secondary structure
).((((.((..((((((.(((....(((((.(((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))
))))))))))).))))).))))))))).))...))))...
SIMILARITIES| miRBase vvi-MIR171i: 8.0E-15 PMRD ppe-miR171: 5.0E-50 microPC miR171: 2.0E-43 | UniProt no hits RFAM 1MIR171_1: 1.0E-13 | most similar mature miRNAs |
Identical with: ppe-miR170 from PMRD (MNEST051345), miR171 from microPC , ppe-miR171 from PMRD , miR171 from microPC |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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