ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAAAGAGAGCAC miRNA* GCTCTCTCTTCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
GATGTGAATGTGAATGAGCTGAGAGATCATGTTGACAGAAGAAAGAGAGCACAACCCGCCATTGGCCAAAGAGATCTTCGCCACTGTTGGGAGTGTGCTC
TCTCTTCTTCTGTCATCATCTCTTGCATTCCCACATCTGTGATGTT
dot-bracket secondary structure
((((((.....(((((....((((((...((.(((((((((((((((((((((.((((.((.((((.((.......)).)))).)).))))..)))))))
))).))))))))))).)))))))).))))).)))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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GATGTGAATGTGAATGAGCTGAGAGATCATGTTGACAGAAGAAAGAGAGCACAACCCGCCATTGGCCAAAGAGATCTTCGCCACTGTTGGGAGTGTGCTC
TCTCTTCTTCTGTCATCATCTCTTGCATTCCCACATCTGTGATGTT
dot-bracket secondary structure
((((((.....(((((....((((((...((.(((((((((((((((((((((.((((.((.((((.((.......)).)))).)).))))..)))))))
))).))))))))))).)))))))).))))).)))))).........
SIMILARITIES| miRBase rco-MIR156e: 2e-21 PMRD gma-miR156b: 3e-17 microPC miR157: 3e-42 | UniProt no hits RFAM mir-156: 6e-16 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045433) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
