ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GGTCAATAAAGCTGTGGGAAG mismatches: 2 bulges: 0 |
pre-miRNA
ACTCCATAAACGATGATCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGATGCTGCAGTCACTCACTC
ACTCTCTCTCTAACTGGCTTGCGGGTCAATAAAGCTGTGGGAAGATACAGATAGGCTCAATAAAAAATCA
dot-bracket secondary structure
)............(((.(((.((((((((.((((((((((((.((((.(((((.(((.((((..((..((....((...(((((......))))).)).))
..))..))))....)))..))))).)))).)))))))))))).)))))))).))).)))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTCCATAAACGATGATCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGATGCTGCAGTCACTCACTC
ACTCTCTCTCTAACTGGCTTGCGGGTCAATAAAGCTGTGGGAAGATACAGATAGGCTCAATAAAAAATCA
dot-bracket secondary structure
)............(((.(((.((((((((.((((((((((((.((((.(((((.(((.((((..((..((....((...(((((......))))).)).))
..))..))))....)))..))))).)))).)))))))))))).)))))))).))).)))...........
SIMILARITIES| miRBase csi-MIR396b: 2.0E-15 PMRD gma-miR396a: 2.0E-15 microPC miR396: 4.0E-57 | UniProt no hits RFAM 6MIR396: 7.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
