ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIRf1215
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGTCACTTTGTTTATAGG miRNA* TGTGAACATCTTGACCAAGGT mismatches: 4 bulges: 0 |
pre-miRNA
CCATTCAAATCCCTGGTCACTTTGTTTATAGGACCAGGTTCTCTAGGACATCTGGGAAGAGCTTTCTCTTGCCACAATGCAGAACAGATGTTTTGTATGT
GTCTGATCCCTGTGAACATCTTGACCAAGGTGAAGAGGG
dot-bracket secondary structure
((.((((...((.((((((...((((((((((....((((.....((((((.(((.(((((....))))).)))..(((((((((....)))))))))))
))))))))))))))))))...)))))).))))))..)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CCATTCAAATCCCTGGTCACTTTGTTTATAGGACCAGGTTCTCTAGGACATCTGGGAAGAGCTTTCTCTTGCCACAATGCAGAACAGATGTTTTGTATGT
GTCTGATCCCTGTGAACATCTTGACCAAGGTGAAGAGGG
dot-bracket secondary structure
((.((((...((.((((((...((((((((((....((((.....((((((.(((.(((((....))))).)))..(((((((((....)))))))))))
))))))))))))))))))...)))))).))))))..)).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11908-akr: 6e-37 microPC no hits | UniProt sp|Q9LF38|EDL1_ARATH: 1e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
