ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGAACAGGTAGAGCATG mismatches: 3 bulges: 0 |
pre-miRNA
AGACTGATAAGACAGGGAACAGGTAGAGCATGGATGGAGTTCCCAACAGAAAAATAGAGCTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGCTGC
CGTCCT
dot-bracket secondary structure
.(((.....((.(((((((.((((((.((((((.(((((((..((((((..........)))))).))))))).)))))).)))))).))))))).))..
.)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACTGATAAGACAGGGAACAGGTAGAGCATGGATGGAGTTCCCAACAGAAAAATAGAGCTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGCTGC
CGTCCT
dot-bracket secondary structure
.(((.....((.(((((((.((((((.((((((.(((((((..((((((..........)))))).))))))).)))))).)))))).))))))).))..
.)))..
SIMILARITIES| miRBase ptc-MIR408: 0.0000000003 PMRD ppe-miR408: 2e-54 microPC miR408: 2e-45 | UniProt no hits RFAM MIR408: 0.0000000000004 | most similar mature miRNAs |
Identical with: miR408 from microPC (MNEST046159) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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