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ABOUT THIS RECORD
ID:
MNEST002275
species:
Pseudoroegneria spicata
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata
Pseudoroegneria
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTCCGTTCCTAAATATAAGAC
miRNA*
TTTATATTTAGGAACAGAGGG
mismatches:
1
bulges:
0
View larger
pre-miRNA
GGAGAGAATTATTACTCC
CTCCGTTCCTAAATATAAGAC
CTTTTAGAGATTACACTGTAGATTACAAACGGAGCAAAATAAGTGAATCTACACTATAAAG
TATGTCTATATACATCCGCCGTATGTAGTCCATAGTGAAATATCTAAAAGGT
TTTATATTTAGGAACAGAGGG
AGTAGTTAGGAAAGT
dot-bracket secondary structure
..........((((((((
(((.(((((((((((((((((
((((((((.(((.((((((.(((((((.((((.......((.(((.((.(((........)
)).)).))).))......)))).))))))).)))))).))).))))))))))
))))))))))))))).)))))
)))))).........
SIMILARITIES
miRBase
tae-MIR1122
:
4e-17
PMRD
tae-miR1122
:
4e-17
microPC
miR1436
:
7e-16
UniProt
no hits
RFAM
MIR1122: 2e-31
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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