ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACTCCCTCCGTTCCTAAAT miRNA* TTAGGAACAGAGGGAGTAGTT mismatches: 1 bulges: 0 |
pre-miRNA
GGAGAGAATTATTACTCCCTCCGTTCCTAAATATAAGACCTTTTAGAGATTACACTGTAGATTACAAACGGAGCAAAATAAGTGAATCTACACTATAAAG
TATGTCTATATACATCCGCCGTATGTAGTCCATAGTGAAATATCTAAAAGGTTTTATATTTAGGAACAGAGGGAGTAGTTAGGAAAGT
dot-bracket secondary structure
..........(((((((((((.(((((((((((((((((((((((((.(((.((((((.(((((((.((((.......((.(((.((.(((........)
)).)).))).))......)))).))))))).)))))).))).))))))))))))))))))))))))).))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAGAGAATTATTACTCCCTCCGTTCCTAAATATAAGACCTTTTAGAGATTACACTGTAGATTACAAACGGAGCAAAATAAGTGAATCTACACTATAAAG
TATGTCTATATACATCCGCCGTATGTAGTCCATAGTGAAATATCTAAAAGGTTTTATATTTAGGAACAGAGGGAGTAGTTAGGAAAGT
dot-bracket secondary structure
..........(((((((((((.(((((((((((((((((((((((((.(((.((((((.(((((((.((((.......((.(((.((.(((........)
)).)).))).))......)))).))))))).)))))).))).))))))))))))))))))))))))).))))))))))).........
SIMILARITIES| miRBase tae-MIR1122: 4e-17 PMRD tae-miR1122: 4e-17 microPC miR1436: 7e-16 | UniProt no hits RFAM MIR1122: 2e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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