ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR1436
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATTATGGGACGGATGGAGT miRNA* TCCCTCCATCCCAAAATGTAA mismatches: 3 bulges: 0 |
pre-miRNA
CAATAAAATCTACTCCCTCCATCCCAAAATGTAAGACGTTTTTGTTCAAAAAACGTCTTACATTATGGACCAAAAACGTCTTACATTATGGGACGGATGG
AGTAGTAATTTGG
dot-bracket secondary structure
(((......(((((((.(((.(((((.(((((((((((((((((((((.((...........)).)))).))))))))))))))))).))))).))).))
)))))....))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAATAAAATCTACTCCCTCCATCCCAAAATGTAAGACGTTTTTGTTCAAAAAACGTCTTACATTATGGACCAAAAACGTCTTACATTATGGGACGGATGG
AGTAGTAATTTGG
dot-bracket secondary structure
(((......(((((((.(((.(((((.(((((((((((((((((((((.((...........)).)))).))))))))))))))))).))))).))).))
)))))....))).
SIMILARITIES| miRBase tae-MIR1130: 0.00000002 PMRD tae-miR1130: 0.00000002 microPC miR1436: 3e-17 | UniProt no hits RFAM MIR1122: 0.00000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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