ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCGACCCAAAATAAGTGT miRNA* ACTAATTTTGGATTGGAGGGA mismatches: 2 bulges: 0 |
pre-miRNA
GATGGATATAATTTAGTACTCCCTCCGACCCAAAATAAGTGTCGCGGTTTTGAACTACACTAATTTTGGATTGGAGGGATAGAAATTAAGAAAGAAG
dot-bracket secondary structure
........((((((.....(((((((((.(((((((.(((((...((((...))))))))).))))))).)))))))))...)))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGGATATAATTTAGTACTCCCTCCGACCCAAAATAAGTGTCGCGGTTTTGAACTACACTAATTTTGGATTGGAGGGATAGAAATTAAGAAAGAAG
dot-bracket secondary structure
........((((((.....(((((((((.(((((((.(((((...((((...))))))))).))))))).)))))))))...)))))).........
SIMILARITIES| miRBase bdi-MIR5180b: 0.00000002 PMRD psa-miR1120: 0.00002 microPC miR1439: 0.00007 | UniProt no hits RFAM MIR1122: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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