ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIRf300
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAAGTCATCCTTGGCTAC miRNA* AGCCAAGGAGACTGCCTGT mismatches: 2 bulges: 2 |
pre-miRNA
AGCCACTCGGGCTAGCCAAGGAGACTGCCTGTGCGCAGTGGGAGACCGGTCCAGAGAGAGAGATCACATTCATGGCCACAGGCAAGTCATCCTTGGCTAC
CAGAAGAAGC
dot-bracket secondary structure
((((.....))))((((((((((((((((((((.((..((((.......))))(((.((....))...)))...))))))))).)))).)))))))))..
..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCCACTCGGGCTAGCCAAGGAGACTGCCTGTGCGCAGTGGGAGACCGGTCCAGAGAGAGAGATCACATTCATGGCCACAGGCAAGTCATCCTTGGCTAC
CAGAAGAAGC
dot-bracket secondary structure
((((.....))))((((((((((((((((((((.((..((((.......))))(((.((....))...)))...))))))))).)))).)))))))))..
..........
SIMILARITIES| miRBase zma-MIR169k: 0.00000000009 PMRD zma-miR169k: 0.00000000009 microPC miR169: 0.00000009 | UniProt no hits RFAM MIR169_5: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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