ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR2033
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTTCTTTACAAAGGGAGTA miRNA* CTCCCTCTGTAGTGATCTA mismatches: 3 bulges: 2 |
pre-miRNA
TGAAGAATTCCGACCATGCTACTACAGTTATACTCCCTCTGTAGTGATCTAAACGCTCTTATATTTCTTTACAAAGGGAGTATATTTCTGTAGTTGGAGG
AGGGAGGACTT
dot-bracket secondary structure
..(((..((((..((...(((((((((.((((((((((.(((((.(((.(((......))).)))...))))).))))))))))...)))))).))).))
..))))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAAGAATTCCGACCATGCTACTACAGTTATACTCCCTCTGTAGTGATCTAAACGCTCTTATATTTCTTTACAAAGGGAGTATATTTCTGTAGTTGGAGG
AGGGAGGACTT
dot-bracket secondary structure
..(((..((((..((...(((((((((.((((((((((.(((((.(((.(((......))).)))...))))).))))))))))...)))))).))).))
..))))..)))
SIMILARITIES| miRBase tae-MIR1121: 0.000000000001 PMRD ave-miR1120: 0.00000000000002 microPC miR1121: 0.0003 | UniProt no hits RFAM MIR1122: 0.0000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
