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ABOUT THIS RECORD
ID:
MNEST002299
species:
Pseudoroegneria spicata
miRNA family:
MIRf380
source:
miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata
Pseudoroegneria
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCGCCGACGACGACGGTGGT
miRNA*
GCTCTCGATGTCGGTGGCCAA
mismatches:
4
bulges:
1
View larger
pre-miRNA
TTCCGGCTATCTTTTTCTTCAA
GCTCTCGATGTCGGTGGCCAA
CTCTTTCCTACTTTCCTTGAAGAGGAGGTAGCGGTACACGAACCACCCGGTGTACCC
GAGCCCAACCAGCTCCAGGAGCTTGGGGAGCAACGGCACGGAGTTGAT
GGCGCCGACGACGACGGTGGT
GAGCCAGAGAGCCACGACG
dot-bracket secondary structure
....((((.(((.....((((.
(((.(((.((((((((.((((
((((...((((((.((((...)))))))))).(((......)))..(((.(((.(((
((((((...........)).)))))))..))).)))...)))))...)
)))))))))).))).)))..)
)))..))).))))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|O04616|Y4115_ARATH: 4e-16
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record