ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIRf380
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCGCCGACGACGACGGTGGT miRNA* GCTCTCGATGTCGGTGGCCAA mismatches: 4 bulges: 1 |
pre-miRNA
TTCCGGCTATCTTTTTCTTCAAGCTCTCGATGTCGGTGGCCAACTCTTTCCTACTTTCCTTGAAGAGGAGGTAGCGGTACACGAACCACCCGGTGTACCC
GAGCCCAACCAGCTCCAGGAGCTTGGGGAGCAACGGCACGGAGTTGATGGCGCCGACGACGACGGTGGTGAGCCAGAGAGCCACGACG
dot-bracket secondary structure
....((((.(((.....((((.(((.(((.((((((((.((((((((...((((((.((((...)))))))))).(((......)))..(((.(((.(((
((((((...........)).)))))))..))).)))...)))))...))))))))))).))).)))..))))..))).))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCCGGCTATCTTTTTCTTCAAGCTCTCGATGTCGGTGGCCAACTCTTTCCTACTTTCCTTGAAGAGGAGGTAGCGGTACACGAACCACCCGGTGTACCC
GAGCCCAACCAGCTCCAGGAGCTTGGGGAGCAACGGCACGGAGTTGATGGCGCCGACGACGACGGTGGTGAGCCAGAGAGCCACGACG
dot-bracket secondary structure
....((((.(((.....((((.(((.(((.((((((((.((((((((...((((((.((((...)))))))))).(((......)))..(((.(((.(((
((((((...........)).)))))))..))).)))...)))))...))))))))))).))).)))..))))..))).))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O04616|Y4115_ARATH: 4e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
