ABOUT THIS RECORDspecies: Quercus petraea
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCTTCATCATCATCATCT miRNA* AAATTGATGTTGAGGATGAG mismatches: 5 bulges: 1 |
pre-miRNA
GCTTAACTCCTTTTTCTTCATCATCATCATCTTCATCACCACCTCCTTCTCCTTCAGCCCCTAAATGGTCATGCAAGGCCTGCACTTTCTTGAACCTTTA
CAAGAGCGGAAGCTGTGATGTCTGTGGCACGAGGGCCTCTGTGTCTTCCTTGTCCAGCTTTGAGGATTTGAAAGAAATTGATGTTGAGGATGAGGGTTTG
GA
dot-bracket secondary structure
.((.(((.((((..((((((.(((((...((((..(((.....(((((..(((((((((.......)))..)).)))).((((....(((((........
)))))))))((((((.((((.....((((((((...))).))))).....)))))))))).)))))..)))))))...))))).)))))).))))))).)
).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCTTAACTCCTTTTTCTTCATCATCATCATCTTCATCACCACCTCCTTCTCCTTCAGCCCCTAAATGGTCATGCAAGGCCTGCACTTTCTTGAACCTTTA
CAAGAGCGGAAGCTGTGATGTCTGTGGCACGAGGGCCTCTGTGTCTTCCTTGTCCAGCTTTGAGGATTTGAAAGAAATTGATGTTGAGGATGAGGGTTTG
GA
dot-bracket secondary structure
.((.(((.((((..((((((.(((((...((((..(((.....(((((..(((((((((.......)))..)).)))).((((....(((((........
)))))))))((((((.((((.....((((((((...))).))))).....)))))))))).)))))..)))))))...))))).)))))).))))))).)
).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.00001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
