ABOUT THIS RECORDspecies: Quercus robur
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Quercus robur Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCTTCT miRNA* AAGAGATGGAGATGGAGATG mismatches: 2 bulges: 1 |
pre-miRNA
CCGGTTTGTCATCATCATCATCATCATCTTCTACATATTCTTCCTCATCAGCGCAAGCAGCTCAGTCCAGTATTAATCCATTAAACAGCGGCGCACTATC
ACCAGCGGCTTGTTATGCAACGATAGAGAAGGCTAGGGAGTTTCCTGAAGGGAAGAAGAAACAGCAAGCTGGGGAAGTAAGTAGTGTGGAAGAGATGGAG
ATGGAGATGGTTCATGG
dot-bracket secondary structure
(((.....(((((.(((((.(((((.((((((((((.((((((((((...((((..((.(((......))).((((....))))...)).)))).(((((
....(((........)))...))))).(...(((......((((((...)))))).......)))...))))))))).))...))))))))))))))).)
)))).)))))....)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCGGTTTGTCATCATCATCATCATCATCTTCTACATATTCTTCCTCATCAGCGCAAGCAGCTCAGTCCAGTATTAATCCATTAAACAGCGGCGCACTATC
ACCAGCGGCTTGTTATGCAACGATAGAGAAGGCTAGGGAGTTTCCTGAAGGGAAGAAGAAACAGCAAGCTGGGGAAGTAAGTAGTGTGGAAGAGATGGAG
ATGGAGATGGTTCATGG
dot-bracket secondary structure
(((.....(((((.(((((.(((((.((((((((((.((((((((((...((((..((.(((......))).((((....))))...)).)))).(((((
....(((........)))...))))).(...(((......((((((...)))))).......)))...))))))))).))...))))))))))))))).)
)))).)))))....)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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