ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: MIRf482
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAAGAGGCAGTGCATGGGAA miRNA* TCCATGCTCTGCTTGTTCCCT mismatches: 4 bulges: 0 |
pre-miRNA
AAAGCTAGAAAAAAAAGAGAGGGAGAGAAAGAGGGGGCCAGGGAAGAGGCAGTGCATGGGAAGAGACCAAACATAGTCATTTGATGTTTTGGTAAAACTC
AATCCATGCTCTGCTTGTTCCCTGTCTCTCTCTCGTTACCACTTTTGTCTTCGTTATTTTC
dot-bracket secondary structure
..(((.(((.....(((((.((...((..((((((((.(((((((.((((((.(((((((..(((((((((....(((....)))..))))))....)))
..))))))).)))))).))))))).))))))))..)).)).))))).)))..)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAGCTAGAAAAAAAAGAGAGGGAGAGAAAGAGGGGGCCAGGGAAGAGGCAGTGCATGGGAAGAGACCAAACATAGTCATTTGATGTTTTGGTAAAACTC
AATCCATGCTCTGCTTGTTCCCTGTCTCTCTCTCGTTACCACTTTTGTCTTCGTTATTTTC
dot-bracket secondary structure
..(((.(((.....(((((.((...((..((((((((.(((((((.((((((.(((((((..(((((((((....(((....)))..))))))....)))
..))))))).)))))).))))))).))))))))..)).)).))))).)))..)))......
SIMILARITIES| miRBase ath-MIR408: 3e-36 PMRD ath-miR408: 3e-36 microPC miR408: 0.0000001 | UniProt no hits RFAM MIR408: 5e-32 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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