miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002329
species: Raphanus raphanistrum
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCTTCCTCTTCCTCTTCAT

miRNA*
 AGAGAGAAAGAGAGAGAGAGA

mismatches: 5
bulges: 0
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pre-miRNA
 ACCAAACATTGCCTCTTCCTCTTCCTCTTCATCCTCCTCCGGTTTTTAACTTTCCAATGAACCAGAGGGAGTATCATATGAACGGATTCTTTGAAGCACC
GCCACCTGGAGCTTCTGCTTACAACAACATTACAAACCAGGCAAGGTTTGGTTCTTCTAACAGCAGCTCCGTACCTTGCTCTATCTCCATGTTAGACGAA
TACTTGTTTTCCCAGATGCAGCAACCGAACTGAGAGAGAGAAAGAGAGAGAGAGATTTTGATG

dot-bracket secondary structure
..((((.(((..(((((.(((((.(((((..((.(((((.(((((.............))))).)))))(((.((...((..(((.(((...)))...))
).))..(((((((.(((.(((.((.(((....((((((......))))))))).)).)))))).)))))))....(((((.(((((.......((((((.
...))))))....))))).)))))..)))))))..))))).))))).))))).)))))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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