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ABOUT THIS RECORD

ID: MNEST002334
species: Raphanus raphanistrum
miRNA family: MIRf206
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGCCGCCGTGTTCTGCCGA

miRNA*
GGTGGGGCGCGGCGGCGCGTT

mismatches: 3
bulges: 0

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pre-miRNA
CAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGACGCATGTCAATCAGTATCCGCCGCCGTGTTCTGCCGAGTTGACTCT

dot-bracket secondary structure
.......((((.(((((((((((((((((.((..(((.(((....)))...))).)).)))))))))))))))))..)))).....


SIMILARITIES
miRBase no hits

PMRD ath-miRf10311-akr: 5e-21

microPC no hits
UniProt sp|Q9FHH8|COL5_ARATH: 0.000000007

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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