ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: miR168b
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGTATCAAGTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 1 bulges: 0 |
pre-miRNA
TAATATGTTGCGGCGGCCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACAGCCACGTGGGTTTTCATGGTTGGCTCGTGAGCAGGGATCG
GATCCCGCCTTGTATCAAGTGAATCCGAGTCCGACGTGAAAGAT
dot-bracket secondary structure
)......(((((.(((.(((.(((((((((((((((((.(((((.((((((.(((..(((((((.(((((....)))))...)))).))))))...)))))
).))))).))))))))))))))))).))).))).))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAATATGTTGCGGCGGCCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACAGCCACGTGGGTTTTCATGGTTGGCTCGTGAGCAGGGATCG
GATCCCGCCTTGTATCAAGTGAATCCGAGTCCGACGTGAAAGAT
dot-bracket secondary structure
)......(((((.(((.(((.(((((((((((((((((.(((((.((((((.(((..(((((((.(((((....)))))...)))).))))))...)))))
).))))).))))))))))))))))).))).))).))))).....
SIMILARITIES| miRBase bna-MIR168: 9.0E-58 PMRD bna-miR168: 9.0E-58 microPC miR168: 2.0E-12 | UniProt no hits RFAM 8MIR168: 3.0E-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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