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ABOUT THIS RECORD
ID:
MNEST002343
species:
Raphanus raphanistrum
miRNA family:
MIR437
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAAGTCAGAGAAGTTTGATGA
miRNA*
GTTTAATTTCATTGATTTTTG
mismatches:
2
bulges:
0
View larger
pre-miRNA
TGGCTCAAGGGGACGTCCTGTGCAGAAACCTAAGATCGAAATCACGCTTGG
GAAGTCAGAGAAGTTTGATGA
ACTAATGGCTGCAGCCAATGAAGAAAAA
GAAGCTGCAGATGCTCAAGTCCAGAGCTGAACATAGCCCTTCTTATGTTATGGTTTCATGGGTCTTTCTTCTGTCTTGATGCTTTATATTATTT
GTTTAA
TTTCATTGATTTTTG
GCTGAATTTGAGTTTGTTATGTTTTGGATGGTTTGTTGTACCTGTTGA
dot-bracket secondary structure
.((..(((.(((.(((((...(((..(((..(((.(((((.(((.(((..(
((((((((.((((((.(((((
(.(((((.(((((((.............
...)))))))..(((((((..(((((..((.(((((((.............))))..)))..))....))))).))))).))....))))))))
))).))
)))).))))))))))
))))).))))).)))))).)))...))))).))).)))..))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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