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ABOUT THIS RECORD

ID: MNEST002345
species: Raphanus raphanistrum
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGTCAATATC

miRNA*
 TATTGGCCTGGTTCATTCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 TAGCACTAGAGAGTCCTCTTTGATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAA
TATCTCAGTGCTCTCTCGTCTCTC

dot-bracket secondary structure
....((.(((((((...((..(((((((((.(((((((.((((((.((.............................)).)))))).))))))).)))))
))))..)).))))))).)).....


SIMILARITIES
miRBase bra-MIR171e: 0.000000000000002

PMRD bna-miR171g: 7e-18

microPC miR171: 2e-42		UniProt no hits

RFAM MIR171_1: 0.000000000008		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046581)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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