ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
GGAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATC
GATAAACCTCTGCATCCAGCGGTTGCC
dot-bracket secondary structure
((..((((.(((((.((((.((((.((((((((.(((.(((...((((...((((.(((((.(......)..))))).)))).))))))).))).)))))
))).)))).)))).))))).)))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATC
GATAAACCTCTGCATCCAGCGGTTGCC
dot-bracket secondary structure
((..((((.(((((.((((.((((.((((((((.(((.(((...((((...((((.(((((.(......)..))))).)))).))))))).))).)))))
))).)))).)))).))))).)))).))
SIMILARITIES| miRBase cpa-MIR162a: 0.000000000000007 PMRD cpa-miR162a: 0.000000000000007 microPC miR162: 1e-19 | UniProt no hits RFAM MIR162_2: 0.0000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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