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ABOUT THIS RECORD
ID:
MNEST002346
species:
Raphanus raphanistrum
miRNA family:
MIR162
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA
miRNA*
GAGGCAGCGGTTCATCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GGAAAGTCACTG
GAGGCAGCGGTTCATCGATC
TCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGA
TC
GATAAACCTCTGCATCCA
GCGGTTGCC
dot-bracket secondary structure
((..((((.(((
((.((((.((((.(((((((
(.(((.(((...((((...((((.(((((.(......)..))))).)))).))))))).))).)))
))
))).)))).)))).))))
).)))).))
SIMILARITIES
miRBase
cpa-MIR162a
:
0.000000000000007
PMRD
cpa-miR162a
:
0.000000000000007
microPC
miR162
:
1e-19
UniProt
no hits
RFAM
MIR162_2: 0.0000000001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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