miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002346
species: Raphanus raphanistrum
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGGCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

View larger
pre-miRNA
GGAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATC
GATAAACCTCTGCATCCA
GCGGTTGCC


dot-bracket secondary structure
((..((((.(((((.((((.((((.((((((((.(((.(((...((((...((((.(((((.(......)..))))).)))).))))))).))).)))))
))).)))).)))).))))
).)))).))



SIMILARITIES
miRBase cpa-MIR162a: 0.000000000000007

PMRD cpa-miR162a: 0.000000000000007

microPC miR162: 1e-19
UniProt no hits

RFAM MIR162_2: 0.0000000001
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;