ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCATCTTCATCATCATCGTCG miRNA* ATGAGGATGATGATGATGATG mismatches: 3 bulges: 0 |
pre-miRNA
CCGGGGATCGTTTAACGGAGGCTATTGAGGTTTTCACGGCGGCATCTTCATCATCATCGTCGGGAATCTCGGGATATGCATCTGCCATGTCTCTACGTGA
TTTGGATCATCACTATGATGACGATGAGGATGATGATGATGATGATGTTGATTGTTATAGCGATGTTGAAGAAGGAGATGAA
dot-bracket secondary structure
.......((.(((((((...(((((...((((...(((.((.((((.((((((((.((((((.(((((..(((((((((....).)))))))).....))
)))...((((((...)))))))))))).)))))))).)))).)).))).))))...)))))..)))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGGGGATCGTTTAACGGAGGCTATTGAGGTTTTCACGGCGGCATCTTCATCATCATCGTCGGGAATCTCGGGATATGCATCTGCCATGTCTCTACGTGA
TTTGGATCATCACTATGATGACGATGAGGATGATGATGATGATGATGTTGATTGTTATAGCGATGTTGAAGAAGGAGATGAA
dot-bracket secondary structure
.......((.(((((((...(((((...((((...(((.((.((((.((((((((.((((((.(((((..(((((((((....).)))))))).....))
)))...((((((...)))))))))))).)))))))).)))).)).))).))))...)))))..)))))))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC miR414: 5e-35 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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