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ABOUT THIS RECORD

ID: MNEST002356
species: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCTTCTTCC

miRNA*
AGGAGGAGGGAAGATTGTTTCA

mismatches: 5
bulges: 1

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pre-miRNA
ATCTGTGAATATGGCCGTGCATCATCATCATCATCTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGT
TTTGAGAAGAGTGAAGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGAT


dot-bracket secondary structure
...........((((..(((...((.(((.((.(((((((((.(((((..(((.....(((((.((((((.....................))))..)).
.))))).....))).....))))))))))))))..)).))).)).....)))))))..........



SIMILARITIES
miRBase no hits

PMRD ghr-miR414f: 0.00003

microPC no hits
UniProt sp|Q94AV5|WIP3_ARATH: 0.00006

RFAM mir-598: 0.0006
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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