ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCGTCATCATCATCGTCA miRNA* ATGATGCATGATACGGTGAAA mismatches: 0 bulges: 2 |
pre-miRNA
AAGTGATCCATGACTTAGCCTGCCATCCGGGTCATCGTCATCATCATCGTCATCACCACATTCTCGACGAAGTCGGGGGCTGGCGCATGGTCAATCTCAT
TGATGATGCATGATACGGTGAAAGTCTGATGATGGGCGGTGAAGTTATATG
dot-bracket secondary structure
.........(((((((.(((((.((((.((.(((((((.(((((((((((((..((((...(((((((...)))))))((....)).)))).........
)))))))).))))))))))))...)).)))).)))))....)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTGATCCATGACTTAGCCTGCCATCCGGGTCATCGTCATCATCATCGTCATCACCACATTCTCGACGAAGTCGGGGGCTGGCGCATGGTCAATCTCAT
TGATGATGCATGATACGGTGAAAGTCTGATGATGGGCGGTGAAGTTATATG
dot-bracket secondary structure
.........(((((((.(((((.((((.((.(((((((.(((((((((((((..((((...(((((((...)))))))((....)).)))).........
)))))))).))))))))))))...)).)))).)))))....)))))))...
SIMILARITIES| miRBase ath-MIR414: 0.0005 PMRD ath-miR414: 0.0005 microPC no hits | UniProt no hits RFAM mir-598: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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