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ABOUT THIS RECORD
ID:
MNEST002371
species:
Raphanus raphanistrum subsp. maritimus
miRNA family:
MIRf1541
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGGTGTTCGACGGAATGCCT
miRNA*
TGTTGTCTTTCAACGCCTTGC
mismatches:
3
bulges:
2
View larger
pre-miRNA
TAAACCTCTACGGACGAGCTGGTATGTTCGAGAATGCACAG
AAGGTGTTCGACGGAATGCCT
GAGAGAAACTGCAAGAGATCAG
TGTTGTCTTTCAACGC
CTTGC
TGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTT
dot-bracket secondary structure
..((((....(((((....(((...(((((...((((((((
((((((((.((.(((..((((
((................))))
.))..))).)))))))
))).)
))..)))))...))))).)))....)))))....))))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9LK57|PP226_ARATH: 1e-18
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record