ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCTTCTTCC miRNA* AGGAGGAGGGAAGATTGTTTCA mismatches: 5 bulges: 1 |
pre-miRNA
ATCTGTGAATATGGCCGTGCATCATCATCATCATCTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGT
TTTGAGAAGAGTGAAGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGAT
dot-bracket secondary structure
...........((((..(((...((.(((.((.(((((((((.(((((..(((.....(((((.((((((.....................))))..)).
.))))).....))).....))))))))))))))..)).))).)).....)))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCTGTGAATATGGCCGTGCATCATCATCATCATCTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGT
TTTGAGAAGAGTGAAGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGAT
dot-bracket secondary structure
...........((((..(((...((.(((.((.(((((((((.(((((..(((.....(((((.((((((.....................))))..)).
.))))).....))).....))))))))))))))..)).))).)).....)))))))..........
SIMILARITIES| miRBase no hits PMRD ghr-miR414f: 0.00003 microPC no hits | UniProt sp|Q94AV5|WIP3_ARATH: 0.00006 RFAM mir-598: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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