ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCTTCCT miRNA* AGAGAGAGAGAGAGAGAGGGG mismatches: 3 bulges: 0 |
pre-miRNA
GAACGACAAGAGAGAGAGAGAGAGAGAGAGGGGAGATTTTTATTCTAGTTCTTTTGGCGATACTGTAGATATTAGAGCCAACTGCCTCCAGACTAGTAAA
GCGCGCAGGAGGAGATTCCGGAAAACTGGAAACAGGGACGGCTCTAGCCAAAGCGTACCCACTTCTTCTGGAAACAGGTGGCGTCGGTCGGCGACGGCTC
CCTCTTCCTCTTCCTCTTCCTCCTTTTCTC
dot-bracket secondary structure
....((.(((((.(((((.(((((.(((((((.((....))..(((((((((..(((.....))).))).))))))((((.(((..((((((..(((...
((((...((.((((...(((.....(((....)))...)))))))..))...))))....)))...))))))..))).))))...(((((....))))))
)))))).))))).))))).)).))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAACGACAAGAGAGAGAGAGAGAGAGAGAGGGGAGATTTTTATTCTAGTTCTTTTGGCGATACTGTAGATATTAGAGCCAACTGCCTCCAGACTAGTAAA
GCGCGCAGGAGGAGATTCCGGAAAACTGGAAACAGGGACGGCTCTAGCCAAAGCGTACCCACTTCTTCTGGAAACAGGTGGCGTCGGTCGGCGACGGCTC
CCTCTTCCTCTTCCTCTTCCTCCTTTTCTC
dot-bracket secondary structure
....((.(((((.(((((.(((((.(((((((.((....))..(((((((((..(((.....))).))).))))))((((.(((..((((((..(((...
((((...((.((((...(((.....(((....)))...)))))))..))...))))....)))...))))))..))).))))...(((((....))))))
)))))).))))).))))).)).))).))..
SIMILARITIES| miRBase mtr-MIR2673b: 0.0002 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.00001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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