ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIRf144
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGGCGTATGAGGAGCCAAG miRNA* TGGCTCCCTGTATGCCATACA mismatches: 3 bulges: 0 |
pre-miRNA
AATGTATTATATATGTATATGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGACCATCGGCGACCTCGGTGGATGGCGTATGAGGAGCCAAGCATAT
TCTCAGCATAGACA
dot-bracket secondary structure
).(((....(((.((.((((((.(((((((.((((((((((.((((.((.((.((((...)))).)).)).)))).)))))))))).))))))).))))))
...))..))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATGTATTATATATGTATATGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGACCATCGGCGACCTCGGTGGATGGCGTATGAGGAGCCAAGCATAT
TCTCAGCATAGACA
dot-bracket secondary structure
).(((....(((.((.((((((.(((((((.((((((((((.((((.((.((.((((...)))).)).)).)))).)))))))))).))))))).))))))
...))..))).)))
SIMILARITIES| miRBase bra-MIR160a: 4.0E-22 PMRD bra-miR160a: 4.0E-22 microPC miR160: 3.0E-32 | UniProt no hits RFAM 0mir-160: 7.0E-15 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
