ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGTTCGGGAC mismatches: 3 bulges: 0 |
pre-miRNA
GGGGGCTCAGATTCGCTTGGTGCAGTTCGGGACTGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGCTCCCGC
CTTGCATCAACTGAATCGGAGCCTC
dot-bracket secondary structure
.(((((((.((((((.(((((((((..(((((((((((.(((.(((.(((((...((((......))))...)))))))).)))...)))))).))))).
.))))))))).)))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGGGGCTCAGATTCGCTTGGTGCAGTTCGGGACTGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGCTCCCGC
CTTGCATCAACTGAATCGGAGCCTC
dot-bracket secondary structure
.(((((((.((((((.(((((((((..(((((((((((.(((.(((.(((((...((((......))))...)))))))).)))...)))))).))))).
.))))))))).)))))).)))))))
SIMILARITIES| miRBase ath-MIR168a: 1e-16 PMRD ath-miRf10239-akr: 1e-16 microPC miR168: 7e-18 | UniProt no hits RFAM MIR168: 8e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
