ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
TTTTTCCACAGCTTTCTTGAACTTCCTTTTTCATTTCCCTTCTTTTAAAGATGTAATAACTAAAGATTGTTTTTAAACATTTAACACTCTAGAAACAAAA
AAAAAAGCTCAAGAAAGCTGTGGGAAA
dot-bracket secondary structure
.(((((((((((((((((((.(((..(((((..((((.......(((((....(((.(((........))).)))....))))).......))))..)))
))..))).)))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTTTCCACAGCTTTCTTGAACTTCCTTTTTCATTTCCCTTCTTTTAAAGATGTAATAACTAAAGATTGTTTTTAAACATTTAACACTCTAGAAACAAAA
AAAAAAGCTCAAGAAAGCTGTGGGAAA
dot-bracket secondary structure
.(((((((((((((((((((.(((..(((((..((((.......(((((....(((.(((........))).)))....))))).......))))..)))
))..))).)))))))))))))))))))
SIMILARITIES| miRBase bna-MIR396a: 0.0000000000001 PMRD bna-miR396a: 0.0000000000001 microPC miR396: 0.000006 | UniProt no hits RFAM MIR396: 0.0000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
