ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCACGATCTA miRNA* GATCATGTTTGCAGTTTCACC mismatches: 2 bulges: 0 |
pre-miRNA
CAGGCATCTGATGAAGCTGCCAGCACGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTTTG
CAGTTTCACCTGTTGACT
dot-bracket secondary structure
((((.......(((((((((.((((.(((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))).)))).)
))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CAGGCATCTGATGAAGCTGCCAGCACGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTTTG
CAGTTTCACCTGTTGACT
dot-bracket secondary structure
((((.......(((((((((.((((.(((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))).)))).)
))))))))))))......
SIMILARITIES| miRBase bra-MIR167c: 3e-32 PMRD bra-miR167c: 3e-32 microPC miR167: 2e-49 | UniProt no hits RFAM MIR167_1: 1e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
