miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002413
species: Raphanus sativus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCACGATCTA

miRNA*
GATCATGTTTGCAGTTTCACC

mismatches: 2
bulges: 0

View larger
pre-miRNA
CAGGCATCTGATGAAGCTGCCAGCACGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTTTG
CAGTTTCACC
TGTTGACT


dot-bracket secondary structure
((((.......(((((((((.((((.(((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))).)))).)
))))))))))
))......



SIMILARITIES
miRBase bra-MIR167c: 3e-32

PMRD bra-miR167c: 3e-32

microPC miR167: 2e-49
UniProt no hits

RFAM MIR167_1: 1e-22
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;