ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCGG miRNA* mismatches: 5 bulges: 0 |
pre-miRNA
GGAAGATCTCTATTGGCAGGAAACCATTACTTAGATCTTTGCATCTCTCTGTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCCCGGTAAT
TC
dot-bracket secondary structure
((.((((((((.((((((((.(((((((((..(((((..(((((......)))))..))))))))))).))).)))))))).)))))))).)).......
..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAAGATCTCTATTGGCAGGAAACCATTACTTAGATCTTTGCATCTCTCTGTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCCCGGTAAT
TC
dot-bracket secondary structure
((.((((((((.((((((((.(((((((((..(((((..(((((......)))))..))))))))))).))).)))))))).)))))))).)).......
..
SIMILARITIES| miRBase bna-MIR399: 8e-42 PMRD bna-miR399: 8e-42 microPC miR399: 3e-41 | UniProt no hits RFAM mir-399: 7e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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