ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
TAGTACATATATGCCTGGCTCCCTGTATGCCATACACTAAGCTCATCGACCATCGAGGACTTACGTGGATGGCGTATGAGGAGCCAAGCATATTTTCATA
dot-bracket secondary structure
........((((((.(((((((.((((((((((.(((((((.((.((((...)))).)))))).))).)))))))))).))))))).)))))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGTACATATATGCCTGGCTCCCTGTATGCCATACACTAAGCTCATCGACCATCGAGGACTTACGTGGATGGCGTATGAGGAGCCAAGCATATTTTCATA
dot-bracket secondary structure
........((((((.(((((((.((((((((((.(((((((.((.((((...)))).)))))).))).)))))))))).))))))).)))))).......
SIMILARITIES| miRBase bra-MIR160a: 2e-27 PMRD bra-miR160a: 2e-27 microPC miR160: 9e-23 | UniProt no hits RFAM mir-160: 2e-17 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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