ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: miR167a
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCATGTTTGCAGTTTCACC miRNA* TGAAGCTGCCAGCATGATCTA mismatches: 3 bulges: 0 |
pre-miRNA
CACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTT
TGCAGTTTCACCCGTTGACTAT
dot-bracket secondary structure
..(((....))).(((((((((.((((((((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))))))))
.)))))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTT
TGCAGTTTCACCCGTTGACTAT
dot-bracket secondary structure
..(((....))).(((((((((.((((((((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))))))))
.)))))))))............
SIMILARITIES| miRBase bra-MIR167c: 1e-37 PMRD bra-miR167c: 1e-37 microPC miR167: 4e-47 | UniProt no hits RFAM MIR167_1: 2e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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