ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
CGTGACAGTTGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTTTTTTGGAAAGAAAGGAAGATAAAAATTAAAAGCATGAACAGATCGATAAA
CCTCTGCATCCAGCGGTTTACC
dot-bracket secondary structure
)((((...((((((((.((((.((((.((((((((.(((.((..(((((((.(((............))).))))))).....)).))).)))))))).))
)).)))).)))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGTGACAGTTGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTTTTTTGGAAAGAAAGGAAGATAAAAATTAAAAGCATGAACAGATCGATAAA
CCTCTGCATCCAGCGGTTTACC
dot-bracket secondary structure
)((((...((((((((.((((.((((.((((((((.(((.((..(((((((.(((............))).))))))).....)).))).)))))))).))
)).)))).)))))))).)))).
SIMILARITIES| miRBase ghr-MIR162a: 4.0E-13 PMRD ghr-miR162a: 4.0E-13 microPC miR162: 4.0E-13 | UniProt no hits RFAM 2MIR162_2: 3.0E-14 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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