ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIRf75
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACGAGACGAATCTTTTGAGC miRNA* AAAAGATTTAACTAATGAC mismatches: 4 bulges: 2 |
pre-miRNA
AGGTAAAAGATTTAACTAATGACACAGTTTGGTTGTAAATCACGAGACGAATCTTTTGAGCCCAATTAGT
dot-bracket secondary structure
.((((((((((((..((..(((.((((.....))))...)))..))..)))))))))..)))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGTAAAAGATTTAACTAATGACACAGTTTGGTTGTAAATCACGAGACGAATCTTTTGAGCCCAATTAGT
dot-bracket secondary structure
.((((((((((((..((..(((.((((.....))))...)))..))..)))))))))..)))........
SIMILARITIES| miRBase osa-MIR2124a: 0.00000001 PMRD osa-miRf11301-akr: 0.000000003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
