ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGAGCGGAGTGAGTACT miRNA* TACCCCCTCTCTTCCAAATTA mismatches: 4 bulges: 0 |
pre-miRNA
AAAATAAAATAGTACCCCCTCTCTTCCAAATTATAAGTCGTTCTGCATATATACATTGTCTAGATACATACTAAAGAGCTACTCCTATGTATCTCTAAAG
AGAGCCCGAACAACTTATAATTTGGAGCGGAGTGAGTACTGAATTAATG
dot-bracket secondary structure
.........((((((...((((.(((((((((((((((.((((.((.((.((.....)).))((((((((.....(((...))).))))))))(((....
)))))..)))).))))))))))))))).))))...))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAATAAAATAGTACCCCCTCTCTTCCAAATTATAAGTCGTTCTGCATATATACATTGTCTAGATACATACTAAAGAGCTACTCCTATGTATCTCTAAAG
AGAGCCCGAACAACTTATAATTTGGAGCGGAGTGAGTACTGAATTAATG
dot-bracket secondary structure
.........((((((...((((.(((((((((((((((.((((.((.((.((.....)).))((((((((.....(((...))).))))))))(((....
)))))..)))).))))))))))))))).))))...))))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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